Co-expression analysis

Gene ID Contig20987_at
Gene name
Homology with ArabidopsisSimilar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-3)
Module size 6 genes
NF 0.49
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.82Contig20987_atContig20987--1e-3At4g02610tryptophan synthase, alpha subunit, putativeO.I.H.G.S.X.
0.6077.30.86EBem09_SQ004_B23_s_atEBem09_SQ004_B23--2e+0At4g15750invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.6077.30.89Contig568_s_atContig568GRP94 homologue-4e-2At1g06240unknown proteinO.I.H.G.S.X.
0.5572.00.87Contig4283_atContig4283--9e-1At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.4458.90.88Contig19275_atContig19275--9e-5At3g13850LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)O.I.H.G.S.X.
0.2630.40.83HC112E03_T3_s_atHC112E03_T3ABA-responsive protein-1e-3At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.699.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.599.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.499.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.998.3GSM372983genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.798.3GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.698.2GSM373009genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.698.2GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.097.9GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208749.1.S1_at, orthologous to the query gene, Contig20987_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.7PtpAffx.208749.1.S1_atAt4g02610--2e+0At3g10120unknown proteinO.I.H.G.S.X.
0.2034.6Ptp.2920.1.S1_atAt4g02610histone 2-4e-17At1g51060HTA10O.I.H.G.S.X.
0.1219.6Ptp.853.1.S1_atAt4g02610--7e-65At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.1118.1PtpAffx.76101.1.A1_atAt4g02610hypothetical protein-3e-1At5g60440AGL62 (Agamous-like 62)O.I.H.G.S.X.
0.0711.6PtpAffx.50543.1.A1_atAt4g02610--6e-2At3g19130ATRBP47B (RNA-binding protein 47B)O.I.H.G.S.X.
0.069.8PtpAffx.127631.1.A1_atAt4g02610bile acid:Na+ symporter family protein-2e+0At3g48590NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)O.I.H.G.S.X.
0.069.8PtpAffx.12564.1.A1_s_atAt4g02610hypothetical protein-2e-64Atcg00170-O.I.H.G.S.X.
0.058.3PtpAffx.37576.1.A1_atAt4g02610--1e+0At2g31700unknown proteinO.I.H.G.S.X.
0.046.9PtpAffx.9002.2.S1_a_atAt4g02610--1e-42At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.035.2PtpAffx.220662.1.S1_atAt4g02610--8e+0At5g23790AtGolS5 (Arabidopsis thaliana galactinol synthase 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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