CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig20987_at

Gene name
Homology with Arabidopsis Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-3)

Module size 6 genes

NF 0.49

%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.82 Contig20987_at Contig20987 - - 1e-3 At4g02610 tryptophan synthase, alpha subunit, putative O.I. H.G. S.X.
0.60 77.3 0.86 EBem09_SQ004_B23_s_at EBem09_SQ004_B23 - - 2e+0 At4g15750 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.60 77.3 0.89 Contig568_s_at Contig568 GRP94 homologue - 4e-2 At1g06240 unknown protein O.I. H.G. S.X.
0.55 72.0 0.87 Contig4283_at Contig4283 - - 9e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.44 58.9 0.88 Contig19275_at Contig19275 - - 9e-5 At3g13850 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) O.I. H.G. S.X.
0.26 30.4 0.83 HC112E03_T3_s_at HC112E03_T3 ABA-responsive protein - 1e-3 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.6 99.7 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.5 99.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4 99.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9 98.3 GSM372983 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.7 98.3 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6 98.2 GSM373009 genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6 98.2 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5 98.2 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5 98.2 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os03g0797400, orthologous to the query gene, Contig20987_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 Os03g0797400 At4g02610 - Tryptophan synthase, alpha chain domain containingprotein 4e-2 At5g66090 unknown protein O.I. H.G. S.X.
0.26 25.6 Os05g0582800 At4g02610 - Peptidase S10, serine carboxypeptidase familyprotein 3e+0 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.24 22.4 Os03g0736900 At4g02610 - Conserved hypothetical protein 2e+0 At5g23100 unknown protein O.I. H.G. S.X.
0.16 11.3 Os01g0655500 At4g02610 - Protein kinase domain containing protein 1e-10 At5g53450 ORG1 (OBP3-responsive gene 1) O.I. H.G. S.X.
0.14 9.3 Os02g0634700 At4g02610 - Serine carboxypeptidase II-1 precursor (EC3.4.16.6) (CP-MII.1) (Fragment) 3e-16 At5g23210 SCPL34 O.I. H.G. S.X.
0.13 8.2 Os09g0401300 At4g02610 - ZIM domain containing protein 4e-3 At1g70700 TIFY7 O.I. H.G. S.X.
0.13 8.2 Os08g0105800 At4g02610 - E-class P450, group I family protein 7e-5 At3g44250 CYP71B38 O.I. H.G. S.X.
0.12 7.2 Os01g0851100 At4g02610 - Axi 1 (Auxin-independent growth promoter)-likeprotein 3e-14 At3g54100 unknown protein O.I. H.G. S.X.
0.09 4.9 Os01g0749400 At4g02610 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 O.I. H.G. S.X.
0.09 4.9 Os01g0338600 At4g02610 - Conserved hypothetical protein 6e-29 At2g43945 unknown protein O.I. H.G. S.X.
0.08 4.2 Os04g0585200 At4g02610 - Glutamate receptor 3.3 precursor (Ligand-gated ionchannel 3.3) 4e-7 At4g35290 GLUR2 (GLUTAMATE RECEPTOR 2) O.I. H.G. S.X.
0.08 4.2 Os02g0668100 At4g02610 - Polyprenyl synthetase family protein 2e-1 At4g18620 - O.I. H.G. S.X.
0.07 3.7 Os04g0623300 At4g02610 - Flavin-containing amine oxidase family protein 2e-18 At2g43020 ATPAO2 (Polyamine oxidase 2) O.I. H.G. S.X.
0.07 3.7 Os01g0629400 At4g02610 - NLI interacting factor domain containing protein 5e-3 At5g11860 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.04 2.0 Os01g0495900 At4g02610 - Protein of unknown function UPF0044 family protein 2e-8 At2g20020 CAF1 O.I. H.G. S.X.
0.04 2.0 Os04g0456700 At4g02610 - Lipoxygenase, LH2 domain containing protein 3e-2 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) O.I. H.G. S.X.
0.04 2.0 Os04g0558400 At4g02610 - Acyl-CoA thioesterase family protein 6e-5 At4g00520 - O.I. H.G. S.X.
0.03 1.4 Os01g0123900 At4g02610 - Bowman-Birk type proteinase inhibitor (EBI) 2e-3 At4g30662 unknown protein O.I. H.G. S.X.
0.03 1.4 Os02g0630300 At4g02610 - 2OG-Fe(II) oxygenase domain containing protein 4e-3 At1g06650 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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