Co-expression analysis

Gene ID Contig20987_at
Gene name
Homology with ArabidopsisSimilar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-3)
Module size 6 genes
NF 0.49
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.82Contig20987_atContig20987--1e-3At4g02610tryptophan synthase, alpha subunit, putativeO.I.H.G.S.X.
0.6077.30.86EBem09_SQ004_B23_s_atEBem09_SQ004_B23--2e+0At4g15750invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.6077.30.89Contig568_s_atContig568GRP94 homologue-4e-2At1g06240unknown proteinO.I.H.G.S.X.
0.5572.00.87Contig4283_atContig4283--9e-1At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.4458.90.88Contig19275_atContig19275--9e-5At3g13850LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)O.I.H.G.S.X.
0.2630.40.83HC112E03_T3_s_atHC112E03_T3ABA-responsive protein-1e-3At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.699.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.599.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.499.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.998.3GSM372983genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.798.3GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.698.2GSM373009genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.698.2GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.097.9GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0797400, orthologous to the query gene, Contig20987_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.6Os03g0797400At4g02610-Tryptophan synthase, alpha chain domain containingprotein4e-2At5g66090unknown proteinO.I.H.G.S.X.
0.2625.6Os05g0582800At4g02610-Peptidase S10, serine carboxypeptidase familyprotein3e+0At1g15000scpl50 (serine carboxypeptidase-like 50)O.I.H.G.S.X.
0.2422.4Os03g0736900At4g02610-Conserved hypothetical protein2e+0At5g23100unknown proteinO.I.H.G.S.X.
0.1611.3Os01g0655500At4g02610-Protein kinase domain containing protein1e-10At5g53450ORG1 (OBP3-responsive gene 1)O.I.H.G.S.X.
0.149.3Os02g0634700At4g02610-Serine carboxypeptidase II-1 precursor (EC3.4.16.6) (CP-MII.1) (Fragment)3e-16At5g23210SCPL34O.I.H.G.S.X.
0.138.2Os09g0401300At4g02610-ZIM domain containing protein4e-3At1g70700TIFY7O.I.H.G.S.X.
0.138.2Os08g0105800At4g02610-E-class P450, group I family protein7e-5At3g44250CYP71B38O.I.H.G.S.X.
0.127.2Os01g0851100At4g02610-Axi 1 (Auxin-independent growth promoter)-likeprotein3e-14At3g54100unknown proteinO.I.H.G.S.X.
0.094.9Os01g0749400At4g02610-Glycosyl transferase, family 20 domain containingprotein2e-12At1g06410ATTPS7O.I.H.G.S.X.
0.094.9Os01g0338600At4g02610-Conserved hypothetical protein6e-29At2g43945unknown proteinO.I.H.G.S.X.
0.084.2Os04g0585200At4g02610-Glutamate receptor 3.3 precursor (Ligand-gated ionchannel 3.3)4e-7At4g35290GLUR2 (GLUTAMATE RECEPTOR 2)O.I.H.G.S.X.
0.084.2Os02g0668100At4g02610-Polyprenyl synthetase family protein2e-1At4g18620-O.I.H.G.S.X.
0.073.7Os04g0623300At4g02610-Flavin-containing amine oxidase family protein2e-18At2g43020ATPAO2 (Polyamine oxidase 2)O.I.H.G.S.X.
0.073.7Os01g0629400At4g02610-NLI interacting factor domain containing protein5e-3At5g11860NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.042.0Os01g0495900At4g02610-Protein of unknown function UPF0044 family protein2e-8At2g20020CAF1O.I.H.G.S.X.
0.042.0Os04g0456700At4g02610-Lipoxygenase, LH2 domain containing protein3e-2At1g72210basic helix-loop-helix (bHLH) family protein (bHLH096)O.I.H.G.S.X.
0.042.0Os04g0558400At4g02610-Acyl-CoA thioesterase family protein6e-5At4g00520-O.I.H.G.S.X.
0.031.4Os01g0123900At4g02610-Bowman-Birk type proteinase inhibitor (EBI)2e-3At4g30662unknown proteinO.I.H.G.S.X.
0.031.4Os02g0630300At4g02610-2OG-Fe(II) oxygenase domain containing protein4e-3At1g066502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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