CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig20987_at

Gene name
Homology with Arabidopsis Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-3)

Module size 6 genes

NF 0.49

%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.82 Contig20987_at Contig20987 - - 1e-3 At4g02610 tryptophan synthase, alpha subunit, putative O.I. H.G. S.X.
0.60 77.3 0.86 EBem09_SQ004_B23_s_at EBem09_SQ004_B23 - - 2e+0 At4g15750 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.60 77.3 0.89 Contig568_s_at Contig568 GRP94 homologue - 4e-2 At1g06240 unknown protein O.I. H.G. S.X.
0.55 72.0 0.87 Contig4283_at Contig4283 - - 9e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.44 58.9 0.88 Contig19275_at Contig19275 - - 9e-5 At3g13850 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) O.I. H.G. S.X.
0.26 30.4 0.83 HC112E03_T3_s_at HC112E03_T3 ABA-responsive protein - 1e-3 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.6 99.7 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.5 99.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4 99.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9 98.3 GSM372983 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.7 98.3 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6 98.2 GSM373009 genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6 98.2 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5 98.2 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5 98.2 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g02610, orthologous to the query gene, Contig20987_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At4g02610 828226 tryptophan synthase, alpha subunit, putative F:tryptophan synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPM O.I. H.G. S.X.
0.67 81.6 At5g06240 830511 emb2735 (embryo defective 2735) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 At5g58240 835936 bis(5'-adenosyl)-triphosphatase, putative Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities. O.I. H.G. S.X.
0.33 38.1 At5g55160 835609 SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. O.I. H.G. S.X.
0.29 30.3 At3g52090 824372 NRPB11 Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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