CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig20974_at

Gene name
Homology with Arabidopsis Similar to At3g14650: CYP72A11 (HF=7e-6)

Module size 7 genes

NF 0.41

%ile 56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.9 0.96 Contig20974_at Contig20974 - - 7e-6 At3g14650 CYP72A11 O.I. H.G. S.X.
0.55 72.0 0.97 Contig14904_at Contig14904 - - 2e+0 At2g28330 unknown protein O.I. H.G. S.X.
0.46 61.0 0.96 Contig16886_at Contig16886 - - 5e+0 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.39 50.5 0.96 Contig9392_at Contig9392 - - 5e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.33 42.6 0.96 Contig21935_at Contig21935 - - 1e+0 At3g49700 ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9) O.I. H.G. S.X.
0.32 40.3 0.96 Contig9752_at Contig9752 - - 3e+0 At2g11651 unknown protein O.I. H.G. S.X.
0.29 35.5 0.96 Contig13215_at Contig13215 - - 3e-10 At5g49720 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.9 99.2 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1 97.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM373002 genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8 95.7 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.4 94.8 GSM372982 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2 94.3 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1 94.1 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0 93.8 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9 93.4 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.19609.1.S1_at, orthologous to the query gene, Contig20974_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 Ta.19609.1.S1_at At3g14650 - - 1e+1 At5g60200 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.91 98.2 TaAffx.58957.1.S1_x_at At3g14650 - - 8e-1 At3g01020 ISU2 (ISCU-LIKE 2) O.I. H.G. S.X.
0.91 98.2 Ta.5629.1.S1_x_at At3g14650 - - 2e-3 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.67 86.3 Ta.19295.1.S1_at At3g14650 - - 2e-2 At5g60200 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.50 72.4 Ta.27168.1.S1_at At3g14650 - - 9e-2 At4g13270 unknown protein O.I. H.G. S.X.
0.43 62.2 Ta.27168.1.S1_x_at At3g14650 - - 9e-2 At4g13270 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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