Co-expression analysis

Gene ID	Contig20971_at
Gene name
Homology with Arabidopsis	Similar to At4g17430: unknown protein (HF=3e-9)
Module size	6 genes
NF	0.21
%ile	26.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.91	Contig20971_at	Contig20971	-	-	3e-9	At4g17430	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig17488_at	Contig17488	beclin 1 protein	-	1e-4	At3g61710	autophagy protein Apg6 family	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig12186_at	Contig12186	-	-	5e-9	At5g17620	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig4112_at	Contig4112	-	-	6e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.91	Contig13209_at	Contig13209	-	-	6e-1	At4g39070	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig7585_at	Contig7585	-	-	2e+0	At3g54490	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
35.5	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
27.8	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
27.6	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.8	99.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.8	99.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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