Co-expression analysis

Gene ID	Contig20962_at
Gene name
Homology with Arabidopsis	Similar to At2g33820: MBAC1 (HF=9e-9)
Module size	6 genes
NF	0.59
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig20962_at	Contig20962	-	-	9e-9	At2g33820	MBAC1	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	Contig4307_at	Contig4307	-	-	3e+0	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig2263_s_at	Contig2263	-	-	2e-9	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	Contig13636_at	Contig13636	-	-	9e-3	At2g25650	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.2	98.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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