Co-expression analysis

Gene ID	Contig20949_at
Gene name
Homology with Arabidopsis	Similar to At4g34150: C2 domain-containing protein (HF=2e+0)
Module size	6 genes
NF	0.74
%ile	93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.99	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig18092_at	Contig18092	-	-	8e-4	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	99.5	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.9	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.3	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.1	99.1	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.7	99.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6	99.0	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.8	98.9	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7	98.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.284.1.A1_at, orthologous to the query gene, Contig20949_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	ZmAffx.284.1.A1_at	At4g34150	-	-	1e+1	At3g53990	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	Zm.8932.1.A1_at	At4g34150	hypothetical protein LOC100279793	-	4e-11	At4g26640	WRKY20	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.9915.1.A1_x_at	At4g34150	-	-	3e-1	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.14039.3.A1_at	At4g34150	-	-	2e-3	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.2683.1.A1_at	At4g34150	hypothetical protein LOC100274215	-	4e+0	At4g03505	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.12601.1.S1_at	At4g34150	-	-	6e-1	At2g01818	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.53	69.1	ZmAffx.165.1.A1_at	At4g34150	hypothetical protein LOC100279998	-	3e+0	At3g28760	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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