CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig20949_at

Gene name
Homology with Arabidopsis Similar to At4g34150: C2 domain-containing protein (HF=2e+0)

Module size 6 genes

NF 0.74

%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.99 Contig20949_at Contig20949 - - 2e+0 At4g34150 C2 domain-containing protein O.I. H.G. S.X.
0.73 88.7 0.98 Contig23530_s_at Contig23530 - - 8e+0 At3g57072 unknown protein O.I. H.G. S.X.
0.73 88.7 0.98 Contig10241_at Contig10241 - - 2e-9 At1g29120 unknown protein O.I. H.G. S.X.
0.67 84.7 0.98 Contig18092_at Contig18092 - - 8e-4 At1g76680 OPR1 O.I. H.G. S.X.
0.67 84.7 0.99 HY09M22u_s_at HY09M22u - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.53 69.7 0.98 Contig14763_at Contig14763 - - 2e-1 At2g37510 RNA-binding protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.99	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.
0.73	88.7	0.98	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.98	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig18092_at	Contig18092	-	-	8e-4	At1g76680	OPR1	O.I.	H.G.	S.X.
0.67	84.7	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.
0.53	69.7	0.98	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.5 99.5 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.9 99.2 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6 99.2 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.3 99.1 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.1 99.1 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.7 99.0 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6 99.0 GSM311253 hsp5_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.8 98.9 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7 98.3 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.3 98.1 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.5	99.5	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.9	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.3	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.1	99.1	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.7	99.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6	99.0	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.8	98.9	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7	98.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.57045.1.S1_at, orthologous to the query gene, Contig20949_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 99.9 TaAffx.57045.1.S1_at At4g34150 - - 4e+0 At2g41360 - O.I. H.G. S.X.
0.53 74.9 Ta.28199.2.A1_at At4g34150 - - 1e-3 At1g65660 SMP1 (SWELLMAP 1) O.I. H.G. S.X.
0.50 72.4 Ta.30638.1.S1_at At4g34150 hypothetical protein LOC543393 - 2e-7 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) O.I. H.G. S.X.
0.49 69.7 Ta.14051.1.S1_at At4g34150 - - 1e-5 At2g38020 VCL1 (VACUOLELESS 1) O.I. H.G. S.X.
0.48 69.0 Ta.3038.1.S1_x_at At4g34150 - - 2e+0 At4g18180 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.47 67.9 Ta.3038.1.S1_at At4g34150 - - 2e+0 At4g18180 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.47 67.9 Ta.7168.1.S1_at At4g34150 - - 1e-65 At4g30600 signal recognition particle receptor alpha subunit family protein O.I. H.G. S.X.
0.44 64.5 Ta.2264.1.S1_s_at At4g34150 - - 4e-29 At3g26670 - O.I. H.G. S.X.
0.43 62.2 Ta.27473.1.S2_at At4g34150 - - 1e-16 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.
0.43 62.2 Ta.1612.1.S1_at At4g34150 - - 2e-1 At1g32150 bZIP transcription factor family protein O.I. H.G. S.X.
0.41 59.6 Ta.16078.1.A1_x_at At4g34150 - - 1e-1 At1g79430 APL (ALTERED PHLOEM DEVELOPMENT) O.I. H.G. S.X.
0.41 59.6 Ta.7089.1.S1_at At4g34150 casein kinase-like protein - 2e-13 At3g13670 protein kinase family protein O.I. H.G. S.X.
0.40 58.4 Ta.28580.1.S1_at At4g34150 - - 4e-9 At2g46260 BTB/POZ domain-containing protein O.I. H.G. S.X.
0.38 54.7 Ta.6555.1.S1_at At4g34150 - - 1e-12 At5g63610 CDKE O.I. H.G. S.X.
0.38 54.7 Ta.28952.1.S1_at At4g34150 - - 4e-5 At5g43920 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.38 54.7 Ta.10446.1.S1_at At4g34150 - - 6e-1 At1g62980 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) O.I. H.G. S.X.
0.38 54.7 Ta.5326.1.S1_at At4g34150 - - 3e+0 At2g27180 unknown protein O.I. H.G. S.X.
0.37 53.0 TaAffx.74403.1.S1_at At4g34150 - - 6e-12 At4g35870 - O.I. H.G. S.X.
0.36 51.9 Ta.16078.1.A1_at At4g34150 - - 1e-1 At1g79430 APL (ALTERED PHLOEM DEVELOPMENT) O.I. H.G. S.X.
0.36 51.9 Ta.5848.1.S1_at At4g34150 - - 5e-2 At3g15430 regulator of chromosome condensation (RCC1) family protein O.I. H.G. S.X.
0.34 48.1 Ta.6588.1.A1_at At4g34150 - - 1e-24 At5g06140 SNX1 (SORTING NEXIN 1) O.I. H.G. S.X.
0.34 48.1 Ta.20659.1.S1_at At4g34150 - - 7e-2 At5g18940 Mo25 family protein O.I. H.G. S.X.
0.34 48.1 Ta.12443.1.A1_x_at At4g34150 - - 7e-3 At4g24400 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) O.I. H.G. S.X.
0.34 48.1 Ta.2438.1.S1_at At4g34150 - - 1e+0 At1g29830 unknown protein O.I. H.G. S.X.
0.32 44.4 Ta.4993.1.A1_at At4g34150 - - 3e+0 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.
0.31 42.7 Ta.8163.1.A1_at At4g34150 - - 8e-5 At3g07610 IBM1 (increase in bonsai methylation 1) O.I. H.G. S.X.
0.31 42.7 Ta.25204.1.S1_at At4g34150 - - 1e-8 At3g17205 UPL6 (UBIQUITIN PROTEIN LIGASE 6) O.I. H.G. S.X.
0.30 40.9 Ta.10310.1.S1_a_at At4g34150 Vacuolar proton-ATPase D subunit - 1e-26 At3g28715 H+-transporting two-sector ATPase, putative O.I. H.G. S.X.
0.30 40.9 Ta.9387.1.S1_at At4g34150 - - 9e-23 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) O.I. H.G. S.X.
0.29 39.2 Ta.6894.1.S1_at At4g34150 - - 1e+0 At3g56540 serine carboxypeptidase, putative O.I. H.G. S.X.
0.29 39.2 Ta.9383.1.S1_a_at At4g34150 - - 6e-4 At2g37160 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.29 39.2 Ta.7065.1.S1_at At4g34150 - - 4e-43 At3g03940 protein kinase family protein O.I. H.G. S.X.
0.29 39.2 Ta.2863.1.S1_s_at At4g34150 - - 2e-8 At2g21510 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.29 39.2 Ta.6166.1.S1_at At4g34150 - - 7e-41 At2g19830 SNF7.2 O.I. H.G. S.X.
0.28 39.2 Ta.7589.1.S1_at At4g34150 - - 1e-17 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) O.I. H.G. S.X.
0.28 39.2 Ta.10034.2.S1_a_at At4g34150 - - 1e+0 At1g70190 ribosomal protein L12 family protein O.I. H.G. S.X.
0.28 39.2 Ta.3448.1.S1_at At4g34150 - - 6e-1 At3g04560 unknown protein O.I. H.G. S.X.
0.27 35.6 Ta.11198.1.S1_at At4g34150 - - 3e+0 At2g26520 unknown protein O.I. H.G. S.X.
0.27 35.6 Ta.6685.1.S1_at At4g34150 - - 7e-2 At4g33210 F-box family protein (FBL15) O.I. H.G. S.X.
0.27 35.6 TaAffx.2548.1.S1_at At4g34150 - - 2e+0 At1g13870 DRL1 (DEFORMED ROOTS AND LEAVES 1) O.I. H.G. S.X.
0.27 35.6 Ta.7800.1.A1_at At4g34150 - - 5e-4 At2g02090 ETL1 O.I. H.G. S.X.
0.25 32.1 Ta.26081.1.A1_at At4g34150 - - 5e+0 At1g56200 emb1303 (embryo defective 1303) O.I. H.G. S.X.
0.23 29.0 Ta.4342.1.S1_at At4g34150 - - 4e-12 At1g79810 TED3 (REVERSAL OF THE DET PHENOTYPE 3) O.I. H.G. S.X.
0.21 25.5 Ta.10486.1.S1_at At4g34150 - - 1e-2 At4g10010 protein kinase family protein O.I. H.G. S.X.
0.20 24.0 Ta.1706.1.A1_at At4g34150 - - 2e+1 At5g01520 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.18 21.0 Ta.2740.1.S1_at At4g34150 - - 4e+0 At5g08185 MIR162A (MICRORNA 162A) O.I. H.G. S.X.
0.17 19.8 Ta.8767.1.S1_at At4g34150 - - 3e-3 At4g36980 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	99.9	TaAffx.57045.1.S1_at	At4g34150	-	-	4e+0	At2g41360	-	O.I.	H.G.	S.X.
0.53	74.9	Ta.28199.2.A1_at	At4g34150	-	-	1e-3	At1g65660	SMP1 (SWELLMAP 1)	O.I.	H.G.	S.X.
0.50	72.4	Ta.30638.1.S1_at	At4g34150	hypothetical protein LOC543393	-	2e-7	At5g20350	TIP1 (TIP GROWTH DEFECTIVE 1)	O.I.	H.G.	S.X.
0.49	69.7	Ta.14051.1.S1_at	At4g34150	-	-	1e-5	At2g38020	VCL1 (VACUOLELESS 1)	O.I.	H.G.	S.X.
0.48	69.0	Ta.3038.1.S1_x_at	At4g34150	-	-	2e+0	At4g18180	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.47	67.9	Ta.3038.1.S1_at	At4g34150	-	-	2e+0	At4g18180	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.47	67.9	Ta.7168.1.S1_at	At4g34150	-	-	1e-65	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.
0.44	64.5	Ta.2264.1.S1_s_at	At4g34150	-	-	4e-29	At3g26670	-	O.I.	H.G.	S.X.
0.43	62.2	Ta.27473.1.S2_at	At4g34150	-	-	1e-16	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.
0.43	62.2	Ta.1612.1.S1_at	At4g34150	-	-	2e-1	At1g32150	bZIP transcription factor family protein	O.I.	H.G.	S.X.
0.41	59.6	Ta.16078.1.A1_x_at	At4g34150	-	-	1e-1	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.
0.41	59.6	Ta.7089.1.S1_at	At4g34150	casein kinase-like protein	-	2e-13	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.
0.40	58.4	Ta.28580.1.S1_at	At4g34150	-	-	4e-9	At2g46260	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.
0.38	54.7	Ta.6555.1.S1_at	At4g34150	-	-	1e-12	At5g63610	CDKE	O.I.	H.G.	S.X.
0.38	54.7	Ta.28952.1.S1_at	At4g34150	-	-	4e-5	At5g43920	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.38	54.7	Ta.10446.1.S1_at	At4g34150	-	-	6e-1	At1g62980	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	O.I.	H.G.	S.X.
0.38	54.7	Ta.5326.1.S1_at	At4g34150	-	-	3e+0	At2g27180	unknown protein	O.I.	H.G.	S.X.
0.37	53.0	TaAffx.74403.1.S1_at	At4g34150	-	-	6e-12	At4g35870	-	O.I.	H.G.	S.X.
0.36	51.9	Ta.16078.1.A1_at	At4g34150	-	-	1e-1	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.
0.36	51.9	Ta.5848.1.S1_at	At4g34150	-	-	5e-2	At3g15430	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.
0.34	48.1	Ta.6588.1.A1_at	At4g34150	-	-	1e-24	At5g06140	SNX1 (SORTING NEXIN 1)	O.I.	H.G.	S.X.
0.34	48.1	Ta.20659.1.S1_at	At4g34150	-	-	7e-2	At5g18940	Mo25 family protein	O.I.	H.G.	S.X.
0.34	48.1	Ta.12443.1.A1_x_at	At4g34150	-	-	7e-3	At4g24400	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8)	O.I.	H.G.	S.X.
0.34	48.1	Ta.2438.1.S1_at	At4g34150	-	-	1e+0	At1g29830	unknown protein	O.I.	H.G.	S.X.
0.32	44.4	Ta.4993.1.A1_at	At4g34150	-	-	3e+0	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.31	42.7	Ta.8163.1.A1_at	At4g34150	-	-	8e-5	At3g07610	IBM1 (increase in bonsai methylation 1)	O.I.	H.G.	S.X.
0.31	42.7	Ta.25204.1.S1_at	At4g34150	-	-	1e-8	At3g17205	UPL6 (UBIQUITIN PROTEIN LIGASE 6)	O.I.	H.G.	S.X.
0.30	40.9	Ta.10310.1.S1_a_at	At4g34150	Vacuolar proton-ATPase D subunit	-	1e-26	At3g28715	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.
0.30	40.9	Ta.9387.1.S1_at	At4g34150	-	-	9e-23	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.
0.29	39.2	Ta.6894.1.S1_at	At4g34150	-	-	1e+0	At3g56540	serine carboxypeptidase, putative	O.I.	H.G.	S.X.
0.29	39.2	Ta.9383.1.S1_a_at	At4g34150	-	-	6e-4	At2g37160	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.29	39.2	Ta.7065.1.S1_at	At4g34150	-	-	4e-43	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.
0.29	39.2	Ta.2863.1.S1_s_at	At4g34150	-	-	2e-8	At2g21510	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.29	39.2	Ta.6166.1.S1_at	At4g34150	-	-	7e-41	At2g19830	SNF7.2	O.I.	H.G.	S.X.
0.28	39.2	Ta.7589.1.S1_at	At4g34150	-	-	1e-17	At4g39080	VHA-A3 (VACUOLAR PROTON ATPASE A3)	O.I.	H.G.	S.X.
0.28	39.2	Ta.10034.2.S1_a_at	At4g34150	-	-	1e+0	At1g70190	ribosomal protein L12 family protein	O.I.	H.G.	S.X.
0.28	39.2	Ta.3448.1.S1_at	At4g34150	-	-	6e-1	At3g04560	unknown protein	O.I.	H.G.	S.X.
0.27	35.6	Ta.11198.1.S1_at	At4g34150	-	-	3e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.
0.27	35.6	Ta.6685.1.S1_at	At4g34150	-	-	7e-2	At4g33210	F-box family protein (FBL15)	O.I.	H.G.	S.X.
0.27	35.6	TaAffx.2548.1.S1_at	At4g34150	-	-	2e+0	At1g13870	DRL1 (DEFORMED ROOTS AND LEAVES 1)	O.I.	H.G.	S.X.
0.27	35.6	Ta.7800.1.A1_at	At4g34150	-	-	5e-4	At2g02090	ETL1	O.I.	H.G.	S.X.
0.25	32.1	Ta.26081.1.A1_at	At4g34150	-	-	5e+0	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.
0.23	29.0	Ta.4342.1.S1_at	At4g34150	-	-	4e-12	At1g79810	TED3 (REVERSAL OF THE DET PHENOTYPE 3)	O.I.	H.G.	S.X.
0.21	25.5	Ta.10486.1.S1_at	At4g34150	-	-	1e-2	At4g10010	protein kinase family protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.1706.1.A1_at	At4g34150	-	-	2e+1	At5g01520	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.18	21.0	Ta.2740.1.S1_at	At4g34150	-	-	4e+0	At5g08185	MIR162A (MICRORNA 162A)	O.I.	H.G.	S.X.
0.17	19.8	Ta.8767.1.S1_at	At4g34150	-	-	3e-3	At4g36980	unknown protein	O.I.	H.G.	S.X.

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Gene ID	Contig20949_at
Gene name
Homology with Arabidopsis	Similar to At4g34150: C2 domain-containing protein (HF=2e+0)
Module size	6 genes
NF	0.74
%ile	93.8

Co-expression analysis

Gene ID Contig20949_at Gene name Homology with ArabidopsisSimilar to At4g34150: C2 domain-containing protein (HF=2e+0) Module size 6 genes NF 0.74 %ile 93.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Contig20949_at

Gene name
Homology with Arabidopsis Similar to At4g34150: C2 domain-containing protein (HF=2e+0)

Module size 6 genes

NF 0.74

%ile 93.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays