Co-expression analysis

Gene ID	Contig20949_at
Gene name
Homology with Arabidopsis	Similar to At4g34150: C2 domain-containing protein (HF=2e+0)
Module size	6 genes
NF	0.74
%ile	93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.99	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig18092_at	Contig18092	-	-	8e-4	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	99.5	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.9	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.3	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.1	99.1	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.7	99.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6	99.0	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.8	98.9	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7	98.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.131640.1.A1_at, orthologous to the query gene, Contig20949_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	96.1	PtpAffx.131640.1.A1_at	At4g34150	-	-	3e-14	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.214981.1.S1_at	At4g34150	hypothetical protein	-	3e+1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	Ptp.2039.2.S1_x_at	At4g34150	hypothetical protein	-	8e-19	At2g23090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.222353.1.S1_s_at	At4g34150	hypothetical protein	-	2e+0	At4g04090	speckle-type POZ protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.202121.1.S1_at	At4g34150	hypothetical protein	-	1e-19	At3g60240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.205232.1.S1_at	At4g34150	hypothetical protein	-	3e-1	At4g29930	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.215475.1.S1_at	At4g34150	hypothetical protein	-	2e-2	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.217733.1.S1_x_at	At4g34150	hypothetical protein	-	7e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.211332.1.S1_at	At4g34150	hypothetical protein	-	2e-1	At2g01260	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.211984.1.S1_at	At4g34150	hypothetical protein	-	8e-3	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.205253.1.S1_at	At4g34150	hypothetical protein	-	7e-116	At5g23110	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.203289.1.S1_at	At4g34150	-	-	3e-9	At4g14960	TUA6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.105803.1.A1_at	At4g34150	-	-	4e-1	At1g30020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	Ptp.4591.1.S1_at	At4g34150	histone H3 /// histone H3	-	1e-63	At5g10400	histone H3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.210165.1.S1_at	At4g34150	-	-	1e-3	At2g25735	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.121088.1.A1_at	At4g34150	-	-	1e-1	At5g15110	lyase/ pectate lyase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.210470.1.S1_s_at	At4g34150	hypothetical protein	-	7e-1	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	Ptp.7147.2.S1_at	At4g34150	-	-	2e-2	At5g38900	DSBA oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.692.30.A1_at	At4g34150	-	-	3e-8	At1g19397	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.50157.1.A1_at	At4g34150	-	-	2e+0	At1g01460	PIPK11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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