Co-expression analysis

Gene ID	Contig20919_at
Gene name
Homology with Arabidopsis	Similar to At3g62820: invertase/pectin methylesterase inhibitor family protein (HF=5e+0)
Module size	7 genes
NF	0.22
%ile	27.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.91	Contig20919_at	Contig20919	-	-	5e+0	At3g62820	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	HVSMEc0003N06f_x_at	HVSMEc0003N06f	-	-	4e+0	At5g39610	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig3478_at	Contig3478	-	-	1e-115	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig5374_at	Contig5374	-	-	3e+0	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	HT11K16u_s_at	HT11K16u	-	-	9e-2	At5g40330	MYB23 (MYB DOMAIN PROTEIN 23)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	HV_CEb0006J06r2_at	HV_CEb0006J06r2	-	-	1e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig6295_at	Contig6295	-	-	1e-17	At3g15460	brix domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.2	99.1	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.3	98.8	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.5	97.6	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.8	97.0	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.9	95.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage