Co-expression analysis

Gene ID	Contig20916_at
Gene name
Homology with Arabidopsis	Similar to At5g66160: JR700 (HF=3e-1)
Module size	13 genes
NF	0.84
%ile	98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	0.97	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select
0.96	99.4	0.98	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.96	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.97	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.96	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	94.5	0.98	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.97	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig5460_s_at	Contig5460	-	-	8e-3	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	Contig5241_at	Contig5241	-	-	8e-2	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.97	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.9	98.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.5	98.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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