Co-expression analysis

Gene ID	Contig2088_s_at
Gene name
Homology with Arabidopsis	Similar to At4g26260: MIOX4 (HF=6e+0)
Module size	6 genes
NF	0.05
%ile	6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig2088_s_at	Contig2088	-	-	6e+0	At4g26260	MIOX4	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig16971_at	Contig16971	-	-	3e-1	At4g30860	SDG4 (SET DOMAIN GROUP 4)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig19125_at	Contig19125	-	-	4e-3	At2g33980	atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.94	Contig17846_at	Contig17846	-	-	3e-1	At4g27150	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.94	Contig18580_at	Contig18580	-	-	8e-16	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.93	Contig12469_at	Contig12469	-	-	5e+0	At5g21125	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.2	99.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.5	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.8	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
8.3	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
6.7	98.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
6.7	98.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
5.8	97.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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