Co-expression analysis

Gene ID Contig20728_at
Gene name
Homology with ArabidopsisSimilar to At1g70070: EMB25 (EMBRYO DEFECTIVE 25) (HF=7e-2)
Module size 9 genes
NF 0.30
%ile 38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8995.40.92Contig20728_atContig20728--7e-2At1g70070EMB25 (EMBRYO DEFECTIVE 25)O.I.H.G.S.X.
0.4356.40.95Contig2458_atContig2458--1e-20At3g27090-O.I.H.G.S.X.
0.3545.10.95HV_CEb0006G02r2_atHV_CEb0006G02r2--2e+1At1g04550IAA12 (AUXIN-INDUCED PROTEIN 12)O.I.H.G.S.X.
0.3240.30.96Contig26093_atContig26093--3e-1At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.2935.50.94Contig20600_atContig20600--4e+0At2g44578protein binding / zinc ion bindingO.I.H.G.S.X.
0.2528.90.96Contig19776_atContig19776--1e+0At2g3760060S ribosomal protein L36 (RPL36A)O.I.H.G.S.X.
0.2326.10.93HVSMEg0016A12r2_s_atHVSMEg0016A12r2--9e-1At5g11880diaminopimelate decarboxylase, putative / DAP carboxylase, putativeO.I.H.G.S.X.
0.2224.20.96HU05N01u_atHU05N01u--1e+0At5g19830aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.086.50.94Contig14679_atContig14679--4e+0At3g52720ACA1 (ALPHA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.394.6GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.294.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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