Co-expression analysis

Gene ID	Contig20708_at
Gene name
Homology with Arabidopsis	Similar to At4g13510: AMT1 (HF=1e-4)
Module size	10 genes
NF	0.33
%ile	44.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig20708_at	Contig20708	-	-	1e-4	At4g13510	AMT1	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig9514_at	Contig9514	-	-	4e+0	At5g17830	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig9980_at	Contig9980	-	-	2e+0	At1g75190	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	HW04A13u_s_at	HW04A13u	-	-	2e+1	At5g66270	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig9727_at	Contig9727	-	-	5e-1	At5g25030	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.2	94.3	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.0	93.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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