Co-expression analysis

Gene ID Contig20708_at
Gene name
Homology with ArabidopsisSimilar to At4g13510: AMT1 (HF=1e-4)
Module size 10 genes
NF 0.33
%ile 44.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig20708_atContig20708--1e-4At4g13510AMT1O.I.H.G.S.X.
0.3747.90.95Contig7191_atContig7191--3e+0At5g17950unknown proteinO.I.H.G.S.X.
0.3138.60.96Contig8415_atContig8415--2e-5At2g33510protein bindingO.I.H.G.S.X.
0.3138.60.96Contig9514_atContig9514--4e+0At5g17830unknown proteinO.I.H.G.S.X.
0.3138.60.96Contig8938_atContig8938--7e-9At3g07300eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.3037.00.95Contig9980_atContig9980--2e+0At1g75190unknown proteinO.I.H.G.S.X.
0.2935.50.95HW04A13u_s_atHW04A13u--2e+1At5g66270zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.2935.50.96Contig9727_atContig9727--5e-1At5g25030ATP binding / nucleotide binding / phenylalanine-tRNA ligaseO.I.H.G.S.X.
0.2732.10.96Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.2122.60.96Contig5161_s_atContig5161--9e-3At1g54860unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.096.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.795.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM372973genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.494.8GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.294.3GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.093.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.893.1GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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