Co-expression analysis

Gene ID	Contig20688_at
Gene name
Homology with Arabidopsis	Similar to At5g30500: galactinol synthase, putative (HF=8e+0)
Module size	14 genes
NF	0.13
%ile	16.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.88	Contig20688_at	Contig20688	-	-	8e+0	At5g30500	galactinol synthase, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.92	rbaak34i24_s_at	rbaak34i24	-	-	3e-1	At5g59870	HTA6	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig13779_at	Contig13779	-	-	3e+0	At4g38090	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig15458_at	Contig15458	-	-	2e+0	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.90	Contig9377_at	Contig9377	-	-	4e-27	At4g26300	emb1027 (embryo defective 1027)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig1386_s_at	Contig1386	-	-	3e+0	At4g23080	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.92	Contig25330_s_at	Contig25330	-	-	1e+0	At1g73280	scpl3 (serine carboxypeptidase-like 3)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig12392_at	Contig12392	-	-	2e-1	At1g54240	DNA binding	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.92	Contig6407_at	Contig6407	-	-	8e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	HY03I24u_s_at	HY03I24u	-	-	6e-2	At3g25470	bacterial hemolysin-related	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.92	HU08B06u_x_at	HU08B06u	-	-	1e-21	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.90	Contig6843_at	Contig6843	-	-	2e-32	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig23442_at	Contig23442	-	-	2e-2	At3g62960	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	HU14O14u_s_at	HU14O14u	-	-	5e-2	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.9	97.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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