Co-expression analysis

Gene ID Contig20680_at
Gene name
Homology with ArabidopsisSimilar to At3g44716: unknown protein (HF=5e+0)
Module size 11 genes
NF 0.72
%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.85Contig20680_atContig20680--5e+0At3g44716unknown proteinO.I.H.G.S.X.
0.8092.50.86Contig14951_atContig14951--6e-1At3g24535unknown proteinO.I.H.G.S.X.
0.7891.20.87Contig8295_atContig8295--2e+0At1g63030ddf2 (DWARF AND DELAYED FLOWERING 2)O.I.H.G.S.X.
0.7689.80.87HU09K13u_s_atHU09K13u--8e+0At5g57280methyltransferaseO.I.H.G.S.X.
0.7589.50.86Contig9463_atContig9463--3e-2At5g23950C2 domain-containing proteinO.I.H.G.S.X.
0.7489.10.88Contig6279_atContig6279--5e-2At3g24750unknown proteinO.I.H.G.S.X.
0.7388.70.87Contig6808_s_atContig6808--5e+0At4g07526unknown proteinO.I.H.G.S.X.
0.7086.00.88Contig19713_atContig19713--4e+0At5g05830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6480.90.86Contig5255_atContig5255--1e-15At4g39660AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.6380.30.88HVSMEk0005D04r2_s_atHVSMEk0005D04r2--8e-42At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.5369.70.86Contig4205_atContig4205--7e+0At5g23140NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.099.7GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.399.4GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.298.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.997.9GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.197.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.696.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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