Co-expression analysis

Gene ID Contig20641_at
Gene name
Homology with ArabidopsisSimilar to At5g01380: transcription factor (HF=9e-1)
Module size 7 genes
NF 0.60
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.91Contig20641_atContig20641--9e-1At5g01380transcription factorO.I.H.G.S.X.
0.8694.80.89Contig11552_atContig11552--1e-13At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.8394.00.91Contig8487_atContig8487--8e-6At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.6784.70.91Contig9746_atContig9746--6e+0At4g24990ATGP4O.I.H.G.S.X.
0.5674.30.89HF11O19r_atHF11O19r--8e-5At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.4255.20.91HV09F14u_atHV09F14u--3e-1At1g71440PFI (PFIFFERLING)O.I.H.G.S.X.
0.3138.60.92Contig11720_atContig11720--2e-2At2g21180unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.096.0GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.096.0GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.895.7GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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