Co-expression analysis

Gene ID Contig20590_at
Gene name
Homology with ArabidopsisSimilar to At3g52520: unknown protein (HF=1e+0)
Module size 7 genes
NF 0.18
%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig20590_atContig20590--1e+0At3g52520unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig19751_atContig19751--5e+0At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4458.90.95Contig16370_atContig16370--3e-8At5g45740unknown proteinO.I.H.G.S.X.
0.2326.10.94Contig6964_s_atContig6964--9e-1At1g21890nodulin MtN21 family proteinO.I.H.G.S.X.
0.119.40.95Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.108.40.94Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.108.40.94Contig23325_atContig23325--1e+0At3g17570F-box family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5774.90.90Contig14900_atContig14900--2e-24At1g53490DNA bindingO.I.H.G.S.X.
0.5369.70.92Contig15590_atContig15590--1e+1At4g02250invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.5066.90.92Contig14568_atContig14568--2e-1At4g09270unknown proteinO.I.H.G.S.X.
0.4255.20.93Contig10213_x_atContig10213--3e+0At4g00120IND (INDEHISCENT)O.I.H.G.S.X.
0.4053.10.94Contig12169_atContig12169--2e+0At4g25640MATE efflux family proteinO.I.H.G.S.X.
0.3950.50.90Contig3855_atContig3855--6e-2At2g21100disease resistance-responsive protein-related / dirigent protein-relatedO.I.H.G.S.X.
0.3849.50.92Contig17032_atContig17032--2e-5At4g01220-O.I.H.G.S.X.
0.3647.10.94HVSMEb0006M02r2_s_atHVSMEb0006M02r2--6e-1At3g22930calmodulin, putativeO.I.H.G.S.X.
0.3545.10.92Contig6831_atContig6831--2e-3At1g12310calmodulin, putativeO.I.H.G.S.X.
0.3545.10.91Contig14579_s_atContig14579--5e-2At1g78480prenyltransferase/squalene oxidase repeat-containing proteinO.I.H.G.S.X.
0.3342.60.91Contig1058_x_atContig1058--4e-31At4g02890UBQ14O.I.H.G.S.X.
0.3342.60.93Contig7021_atContig7021--7e-1At3g05425unknown proteinO.I.H.G.S.X.
0.3342.60.94HM04D16u_s_atHM04D16u--3e+0At5g10400histone H3O.I.H.G.S.X.
0.3342.60.95Contig7221_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3138.60.87Contig13866_atContig13866--6e-2At3g24780-O.I.H.G.S.X.
0.3138.60.89Contig12465_atContig12465--3e-2At3g63250HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.2935.50.91rbags12c10_atrbags12c10--2e-2At3g50530CRK (CDPK-related kinase)O.I.H.G.S.X.
0.2935.50.94Contig5542_atContig5542--6e-4At3g54640TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)O.I.H.G.S.X.
0.2935.50.96Contig8141_atContig8141--2e+0At5g07950unknown proteinO.I.H.G.S.X.
0.2835.50.88Contig19830_atContig19830--4e-1At3g07470unknown proteinO.I.H.G.S.X.
0.2732.10.88Contig10223_atContig10223--5e-1At1g77830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2732.10.94Contig721_s_atContig721--2e+0At4g19095unknown proteinO.I.H.G.S.X.
0.2528.90.90Contig16674_atContig16674--4e-1At5g40770ATPHB3 (PROHIBITIN 3)O.I.H.G.S.X.
0.2528.90.90HS08N07u_atHS08N07u--3e-1At1g03820unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig6013_atContig6013--4e+0At4g29020glycine-rich proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.399.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
14.899.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
13.399.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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