Co-expression analysis

Gene ID Contig20590_at
Gene name
Homology with ArabidopsisSimilar to At3g52520: unknown protein (HF=1e+0)
Module size 7 genes
NF 0.18
%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig20590_atContig20590--1e+0At3g52520unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig19751_atContig19751--5e+0At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4458.90.95Contig16370_atContig16370--3e-8At5g45740unknown proteinO.I.H.G.S.X.
0.2326.10.94Contig6964_s_atContig6964--9e-1At1g21890nodulin MtN21 family proteinO.I.H.G.S.X.
0.119.40.95Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.108.40.94Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.108.40.94Contig23325_atContig23325--1e+0At3g17570F-box family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.399.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
14.899.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
13.399.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1614693_at, orthologous to the query gene, Contig20590_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8494.81614693_atAt3g52520--4e+0At3g12345unknown proteinO.I.H.G.S.X.
0.3446.81608227_atAt3g52520hypothetical protein LOC100255896-1e+0At5g66930unknown proteinO.I.H.G.S.X.
0.3345.71619040_atAt3g52520hypothetical protein LOC100265941-3e-57At3g20800rcd1-like cell differentiation protein, putativeO.I.H.G.S.X.
0.2937.71618387_atAt3g52520hypothetical protein LOC100249044-4e-25At2g01970endomembrane protein 70, putativeO.I.H.G.S.X.
0.2837.71622624_atAt3g52520--4e-37At1g752105' nucleotidase family proteinO.I.H.G.S.X.
0.2734.01607001_atAt3g52520hypothetical protein LOC100259087-0At1g75780TUB1O.I.H.G.S.X.
0.2734.01610855_atAt3g52520hypothetical protein LOC100250925-9e-27At5g51220ubiquinol-cytochrome C chaperone family proteinO.I.H.G.S.X.
0.2632.01612451_atAt3g52520monodehydroascorbate reductase-3e-22At3g52880monodehydroascorbate reductase, putativeO.I.H.G.S.X.
0.2530.51621018_atAt3g52520hypothetical protein LOC100243781-4e+0At4g21030Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.2428.71615081_atAt3g52520hypothetical protein LOC100252838-2e-17At3g16090zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2428.71609810_atAt3g52520hypothetical protein LOC100245397-3e-32At4g08900arginaseO.I.H.G.S.X.
0.1920.91616438_atAt3g52520hypothetical protein LOC100253570-1e-13At1g63940monodehydroascorbate reductase, putativeO.I.H.G.S.X.
0.1718.21621310_atAt3g52520hypothetical protein LOC100244933-1e+0At1g51300acyl-protein thioesterase-relatedO.I.H.G.S.X.
0.1414.41618321_atAt3g52520hypothetical protein LOC100260152-1e-18At1g71350eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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