Co-expression analysis

Gene ID Contig20590_at
Gene name
Homology with ArabidopsisSimilar to At3g52520: unknown protein (HF=1e+0)
Module size 7 genes
NF 0.18
%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig20590_atContig20590--1e+0At3g52520unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig19751_atContig19751--5e+0At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4458.90.95Contig16370_atContig16370--3e-8At5g45740unknown proteinO.I.H.G.S.X.
0.2326.10.94Contig6964_s_atContig6964--9e-1At1g21890nodulin MtN21 family proteinO.I.H.G.S.X.
0.119.40.95Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.108.40.94Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.108.40.94Contig23325_atContig23325--1e+0At3g17570F-box family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.399.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
14.899.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
13.399.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.90089.1.S1_at, orthologous to the query gene, Contig20590_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.1TaAffx.90089.1.S1_atAt3g52520--4e+0At1g28307unknown proteinO.I.H.G.S.X.
0.7489.4TaAffx.61230.2.S1_x_atAt3g52520--5e-12At3g07780OBE1 (OBERON1)O.I.H.G.S.X.
0.3854.7TaAffx.38085.1.S1_atAt3g52520--4e+0At5g44430PDF1.2c (plant defensin 1.2c)O.I.H.G.S.X.
0.3549.8TaAffx.128478.2.S1_s_atAt3g52520--8e-11At5g32470-O.I.H.G.S.X.
0.3346.9Ta.1286.2.S1_x_atAt3g52520--4e+0At5g61412unknown proteinO.I.H.G.S.X.
0.3244.4Ta.10289.2.S1_atAt3g52520Vernalization insensitive 3-1e-2At4g30200-O.I.H.G.S.X.
0.3040.9TaAffx.91705.1.S1_atAt3g52520--7e-2At3g09250DNA binding / nucleaseO.I.H.G.S.X.
0.2939.2TaAffx.8275.1.S1_atAt3g52520--2e-3At1g21080DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2735.6Ta.7295.3.S1_a_atAt3g52520--4e-3At2g23420NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)O.I.H.G.S.X.
0.1517.1Ta.7299.2.S1_a_atAt3g52520--5e-12At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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