Co-expression analysis

Gene ID Contig20580_at
Gene name
Homology with ArabidopsisSimilar to At3g18560: unknown protein (HF=7e+0)
Module size 10 genes
NF 0.72
%ile 92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6985.50.84Contig20580_atContig20580--7e+0At3g18560unknown proteinO.I.H.G.S.X.
0.8494.30.91Contig11519_atContig11519--2e-4At1g66680AR401O.I.H.G.S.X.
0.7891.20.90Contig11168_atContig11168--1e-15At5g12480CPK7 (calmodulin-domain protein kinase 7)O.I.H.G.S.X.
0.7891.20.90Contig15950_atContig15950--1e+0At1g15220CCMHO.I.H.G.S.X.
0.7187.10.93Contig6254_atContig6254--3e+0At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7086.00.91Contig11041_atContig11041--1e+0At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.6784.70.91Contig20150_atContig20150--1e-5At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.6178.70.91Contig4511_atContig4511SGT1 protein-1e-11At4g11260SGT1BO.I.H.G.S.X.
0.6077.30.90Contig5149_atContig5149--4e-2At1g66670CLPP3O.I.H.G.S.X.
0.5066.90.90Contig699_s_atContig699--1e+0At3g07425unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.699.7GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
14.099.5GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
13.799.5GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM146364Maythorpe Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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