Co-expression analysis

Gene ID	Contig20549_at
Gene name
Homology with Arabidopsis	Similar to At2g39480: PGP6 (P-GLYCOPROTEIN 6) (HF=2e-27)
Module size	6 genes
NF	0.61
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig15303_at	Contig15303	-	-	6e-1	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig10338_at	Contig10338	-	-	4e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig11845_at	Contig11845	-	-	2e+0	At2g35850	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig11793_at	Contig11793	-	-	9e-9	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage