Co-expression analysis

Gene ID	Contig20429_at
Gene name
Homology with Arabidopsis	Similar to At3g25180: CYP82G1 (HF=4e-1)
Module size	18 genes
NF	0.27
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.89	Contig20429_at	Contig20429	-	-	4e-1	At3g25180	CYP82G1	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig17334_at	Contig17334	-	-	3e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.89	Contig11651_at	Contig11651	-	-	2e-6	At2g19870	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig17320_at	Contig17320	-	-	1e-1	At3g61040	CYP76C7	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig17604_at	Contig17604	-	-	6e-6	At3g05240	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig19716_at	Contig19716	-	-	2e-6	At3g01890	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig24535_at	Contig24535	-	-	2e-1	At3g51220	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig16473_at	Contig16473	-	-	2e+0	At5g51080	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig16107_at	Contig16107	-	-	2e+0	At3g09980	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig20730_s_at	Contig20730	-	-	5e-3	At1g73885	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig9449_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.92	HVSMEf0001M07r2_at	HVSMEf0001M07r2	-	-	4e+0	At5g26260	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig8926_at	Contig8926	-	-	6e-9	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig2550_x_at	Contig2550	pathogenesis-related protein 4	-	4e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.93	Contig6862_s_at	Contig6862	-	-	3e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	Contig16214_at	Contig16214	-	-	2e+0	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.92	Contig18639_at	Contig18639	-	-	3e-1	At4g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig17589_at	Contig17589	-	-	7e-15	At1g18030	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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