CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig20424_at

Gene name
Homology with Arabidopsis Similar to At3g49680: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) (HF=2e-12)

Module size 6 genes

NF 0.49

%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.9 0.90 Contig20424_at Contig20424 - - 2e-12 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) O.I. H.G. S.X.
0.91 98.1 0.91 HU11B09u_s_at HU11B09u - - 5e-3 At4g20010 PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9) O.I. H.G. S.X.
0.83 94.0 0.90 Contig9144_at Contig9144 - - 1e-15 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.67 84.7 0.91 HU11B09u_at HU11B09u - - 5e-3 At4g20010 PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9) O.I. H.G. S.X.
0.33 42.6 0.91 Contig14296_at Contig14296 - - 4e+0 At1g07140 SIRANBP O.I. H.G. S.X.
0.20 21.1 0.91 Contig12950_at Contig12950 - - 3e-6 At1g76510 ARID/BRIGHT DNA-binding domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.0 99.2 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM372939 genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.6 98.8 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.6 98.8 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1 98.0 GSM373004 genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0 97.9 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3 97.4 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM372998 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1622060_at, orthologous to the query gene, Contig20424_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 60.1 1622060_at At3g49680 - - 3e-32 At5g65780 ATBCAT-5 O.I. H.G. S.X.
0.29 37.7 1609933_at At3g49680 - - 4e-63 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) O.I. H.G. S.X.
0.21 24.0 1622537_at At3g49680 - - 1e-22 At5g44730 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.08 8.5 1610127_at At3g49680 - - 1e-1 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) O.I. H.G. S.X.
0.06 6.8 1609051_at At3g49680 - - 4e-32 At5g47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative O.I. H.G. S.X.
0.05 6.0 1620444_at At3g49680 - - 1e-29 At5g57190 PSD2 (phosphatidylserine decarboxylase 2) O.I. H.G. S.X.
0.04 5.2 1614118_at At3g49680 - - 3e-17 At2g14910 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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