Co-expression analysis

Gene ID	Contig20424_at
Gene name
Homology with Arabidopsis	Similar to At3g49680: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) (HF=2e-12)
Module size	6 genes
NF	0.49
%ile	69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.90	Contig20424_at	Contig20424	-	-	2e-12	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.91	HU11B09u_s_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.90	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	HU11B09u_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig14296_at	Contig14296	-	-	4e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.91	Contig12950_at	Contig12950	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.2	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.6	98.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.6	98.8	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.49521.2.S1_at, orthologous to the query gene, Contig20424_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.49521.2.S1_at	At3g49680	-	-	5e-34	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.07	10.2	GmaAffx.92033.1.S1_x_at	At3g49680	-	-	3e-7	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.92033.1.S1_at	At3g49680	-	-	3e-7	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.49521.1.S1_at	At3g49680	-	-	1e-19	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.15133.2.S1_a_at	At3g49680	-	-	5e-1	At4g13860	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.8323.2.S1_a_at	At3g49680	-	-	9e-9	At5g19680	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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