Co-expression analysis

Gene ID	Contig20405_at
Gene name
Homology with Arabidopsis	Similar to At2g17442: unknown protein (HF=2e+0)
Module size	40 genes
NF	0.22
%ile	26.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.76	Contig20405_at	Contig20405	-	-	2e+0	At2g17442	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig3186_at	Contig3186	-	-	5e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig748_at	Contig748	-	-	8e-8	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	EBem04_SQ004_I19_at	EBem04_SQ004_I19	-	-	7e-1	At2g15960	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	rbaal24c05_s_at	rbaal24c05	-	-	1e+1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	Contig13943_s_at	Contig13943	-	-	4e+0	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.86	HVSMEa0012J22r2_at	HVSMEa0012J22r2	-	-	2e-4	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.88	Contig22094_at	Contig22094	-	-	2e+0	At2g14288	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig23093_at	Contig23093	-	-	5e-25	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.90	Contig3203_at	Contig3203	-	-	1e-35	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig3907_at	Contig3907	-	-	6e-10	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	HVSMEc0001A03r2_at	HVSMEc0001A03r2	-	-	3e+0	At3g52690	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig3265_s_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig15192_s_at	Contig15192	-	-	2e-2	At4g22190	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig13941_at	Contig13941	-	-	6e+0	At5g37900	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig13410_at	Contig13410	-	-	6e-1	At1g22275	ZYP1b	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig22636_at	Contig22636	-	-	3e+0	At2g14846	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig13141_at	Contig13141	-	-	1e-5	At4g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig11982_at	Contig11982	-	-	7e+0	At5g52840	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.92	HV06I15u_at	HV06I15u	-	-	3e-1	At5g35870	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig2826_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig4017_s_at	Contig4017	-	-	1e+0	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	baak46p14_s_at	baak46p14	-	-	6e+0	At5g02740	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.89	Contig3922_at	Contig3922	-	-	2e-45	At5g16070	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig12534_at	Contig12534	-	-	4e-1	At1g69828	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.92	Contig7401_at	Contig7401	-	-	1e-28	At1g47550	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.92	Contig25386_at	Contig25386	-	-	3e+0	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig9127_at	Contig9127	-	-	5e-2	At4g20670	lipase	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	rbasd17i02_s_at	rbasd17i02	-	-	9e-35	At2g21330	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.90	Contig15307_at	Contig15307	-	-	2e+0	At3g15357	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.89	Contig2966_at	Contig2966	-	-	1e+0	At2g25670	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.90	Contig19461_at	Contig19461	-	-	3e-1	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.92	Contig1696_at	Contig1696	-	-	5e-28	At4g18100	60S ribosomal protein L32 (RPL32A)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.89	Contig13583_at	Contig13583	-	-	6e+0	At3g60780	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.88	HM04N04u_at	HM04N04u	-	-	1e+0	At4g31030	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig6680_at	Contig6680	-	-	2e-1	At2g23560	MES7 (METHYL ESTERASE 7)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.89	Contig9443_at	Contig9443	-	-	7e-3	At3g13570	SCL30a	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.90	Contig17834_at	Contig17834	-	-	1e+0	At1g36980	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	Contig17196_at	Contig17196	-	-	2e-4	At5g06180	-	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig5629_at	Contig5629	-	-	1e-3	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.2	90.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.1	89.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.1	89.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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