Co-expression analysis

Gene ID	Contig20287_at
Gene name
Homology with Arabidopsis	Similar to At1g03810: DNA-binding protein-related (HF=6e-1)
Module size	11 genes
NF	0.24
%ile	29.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.92	Contig20287_at	Contig20287	-	-	6e-1	At1g03810	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.93	Contig10495_s_at	Contig10495	-	-	4e-3	At3g16190	isochorismatase hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig15499_at	Contig15499	-	-	3e-1	At1g23950	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	Contig9431_at	Contig9431	-	-	1e-1	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig7905_at	Contig7905	-	-	3e+0	At4g37880	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig15041_at	Contig15041	-	-	2e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig4941_s_at	Contig4941	-	-	3e-2	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig15737_at	Contig15737	-	-	1e-1	At3g30370	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig21290_at	Contig21290	-	-	2e+0	At5g01910	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig11605_at	Contig11605	-	-	4e-8	At5g47310	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig8406_at	Contig8406	-	-	4e-2	At3g10040	transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.7	95.5	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.9	93.4	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8	93.1	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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