Co-expression analysis

Gene ID	Contig20270_at
Gene name
Homology with Arabidopsis	Similar to At4g28160: hydroxyproline-rich glycoprotein family protein (HF=2e+0)
Module size	6 genes
NF	0.49
%ile	68.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	Contig20270_at	Contig20270	-	-	2e+0	At4g28160	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.93	Contig13331_s_at	Contig13331	-	-	6e-16	At2g21860	violaxanthin de-epoxidase-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig20667_at	Contig20667	-	-	1e+0	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	S0001000007H12F1_at	S0001000007H12F1	-	-	2e+0	At5g11130	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig4367_s_at	Contig4367	-	-	3e+0	At3g04300	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	Contig25020_at	Contig25020	-	-	7e-3	At5g07450	CYCP4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.1	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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