Co-expression analysis

Gene ID	Contig20248_at
Gene name
Homology with Arabidopsis	Similar to At3g16880: F-box protein-related (HF=5e+0)
Module size	33 genes
NF	0.29
%ile	37.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.94	Contig20248_at	Contig20248	-	-	5e+0	At3g16880	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig11766_at	Contig11766	-	-	1e-2	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig17435_at	Contig17435	-	-	9e-2	At1g75980	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig17131_at	Contig17131	-	-	4e+0	At5g44650	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig18946_at	Contig18946	-	-	1e+0	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig18484_at	Contig18484	-	-	7e+0	At5g64480	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	HVSMEc0011A03f_at	HVSMEc0011A03f	-	-	1e-23	Atcg00520	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	HVSMEf0005F10r2_at	HVSMEf0005F10r2	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig13484_at	Contig13484	-	-	7e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig3532_at	Contig3532	-	-	8e+0	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig6787_at	Contig6787	-	-	7e-1	At2g36190	AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig20382_at	Contig20382	-	-	4e-1	At1g53910	RAP2.12	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig15347_at	Contig15347	-	-	3e-2	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig13164_at	Contig13164	-	-	2e+0	At5g60553	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig10738_at	Contig10738	-	-	2e+0	At3g55790	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.97	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig20343_at	Contig20343	-	-	3e-1	At2g20805	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig12110_s_at	Contig12110	-	-	3e-1	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig19484_at	Contig19484	-	-	3e-2	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	HI05P18u_s_at	HI05P18u	-	-	4e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage