Co-expression analysis

Gene ID	Contig20219_at
Gene name
Homology with Arabidopsis	Similar to At3g24770: CLE41 (CLAVATA3/ESR-RELATED 41) (HF=1e-2)
Module size	7 genes
NF	0.54
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.91	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.90	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig21671_at	Contig21671	-	-	1e+0	At4g15260	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	Contig20711_at	Contig20711	-	-	1e+0	At3g50337	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig6309_at	Contig6309	-	-	6e-1	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.5	97.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2	97.4	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
5.0	97.2	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.5	96.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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