Co-expression analysis

Gene ID Contig20174_at
Gene name
Homology with ArabidopsisSimilar to At5g26670: pectinacetylesterase, putative (HF=5e-3)
Module size 6 genes
NF 0.30
%ile 39.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig20174_atContig20174--5e-3At5g26670pectinacetylesterase, putativeO.I.H.G.S.X.
0.4458.90.94Contig9526_atContig9526--2e-6At4g34040zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4458.90.94HV_CEa0006M01r2_atHV_CEa0006M01r2--3e-1At2g27750nucleolar matrix protein-relatedO.I.H.G.S.X.
0.3240.30.93Contig13368_atContig13368--5e+0At5g38890exoribonuclease-relatedO.I.H.G.S.X.
0.2021.10.94Contig23673_atContig23673--8e-1At5g07950unknown proteinO.I.H.G.S.X.
0.1412.90.93Contig18474_atContig18474--7e-2At2g15660AGL95 (AGAMOUS-LIKE 95)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.197.3GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.096.0GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.096.0GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.895.7GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.795.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
3.795.5GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
3.695.3GSM261028ABA-Late-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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