Co-expression analysis

Gene ID Contig20148_s_at
Gene name
Homology with ArabidopsisSimilar to At2g33400: unknown protein (HF=2e-2)
Module size 6 genes
NF 0.75
%ile 94.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.91Contig20148_s_atContig20148--2e-2At2g33400unknown proteinO.I.H.G.S.X.
0.9198.10.90Contig20825_atContig20825--5e-1At1g62980ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)O.I.H.G.S.X.
0.9198.10.91Contig17903_atContig17903--1e-3At5g26230unknown proteinO.I.H.G.S.X.
0.8092.50.93Contig11598_atContig11598--2e-10At1g32360zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.6784.70.90Contig14852_atContig14852--2e+0At1g47250PAF2O.I.H.G.S.X.
0.5066.90.90EBes01_SQ003_N19_atEBes01_SQ003_N19--2e-1At5g57850aminotransferase class IV family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.699.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.399.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.499.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.895.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.595.1GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
3.494.8GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
3.294.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.294.3GSM281750Genotype: Morex - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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