CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig2012_s_at

Gene name
Homology with Arabidopsis Similar to At3g46230: ATHSP17.4 (HF=2e-21)

Module size 6 genes

NF 0.24

%ile 29.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.91 Contig2012_s_at Contig2012 - - 2e-21 At3g46230 ATHSP17.4 O.I. H.G. S.X.
0.60 77.3 0.91 EBes01_SQ002_O07_at EBes01_SQ002_O07 - - 3e+0 At4g00880 auxin-responsive family protein O.I. H.G. S.X.
0.35 45.1 0.91 Contig20148_s_at Contig20148 - - 2e-2 At2g33400 unknown protein O.I. H.G. S.X.
0.22 24.2 0.92 HVSMEm0007D17r2_at HVSMEm0007D17r2 - - 5e+0 At5g59050 unknown protein O.I. H.G. S.X.
0.11 9.4 0.91 Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.10 8.4 0.91 HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.86	Contig20120_at	Contig20120	-	-	4e+0	At5g09270	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.88	HA27D08r_at	HA27D08r	-	-	5e-2	At3g04660	F-box family protein	O.I.	H.G.	S.X.
0.55	72.0	0.90	Contig8334_at	Contig8334	-	-	1e+0	At1g29810	dehydratase family	O.I.	H.G.	S.X.
0.50	66.9	0.86	HY03P16u_at	HY03P16u	-	-	1e+0	At1g48010	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.47	62.2	0.85	HF08F07r_at	HF08F07r	-	-	2e-1	At2g47780	rubber elongation factor (REF) protein-related	O.I.	H.G.	S.X.
0.44	58.9	0.89	Contig15890_at	Contig15890	-	-	1e+0	At4g18070	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.89	Contig16785_at	Contig16785	-	-	1e+0	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.36	47.1	0.84	EBpi05_SQ004_F11_at	EBpi05_SQ004_F11	-	-	8e-1	At4g01440	nodulin MtN21 family protein	O.I.	H.G.	S.X.
0.35	45.1	0.88	Contig10590_at	Contig10590	-	-	7e-7	At5g13690	alpha-N-acetylglucosaminidase family / NAGLU family	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig20825_at	Contig20825	-	-	5e-1	At1g62980	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	O.I.	H.G.	S.X.
0.33	42.6	0.90	Contig15957_at	Contig15957	-	-	3e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.
0.32	40.3	0.87	Contig21916_at	Contig21916	-	-	4e-1	At2g42760	unknown protein	O.I.	H.G.	S.X.
0.30	37.0	0.88	EBes01_SQ003_N19_at	EBes01_SQ003_N19	-	-	2e-1	At5g57850	aminotransferase class IV family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.9 99.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
20.3 99.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM398279 Moroc9-75_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1 96.2 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9 95.8 GSM398280 Moroc9-75_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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