CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig2012_s_at

Gene name
Homology with Arabidopsis Similar to At3g46230: ATHSP17.4 (HF=2e-21)

Module size 6 genes

NF 0.24

%ile 29.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.91 Contig2012_s_at Contig2012 - - 2e-21 At3g46230 ATHSP17.4 O.I. H.G. S.X.
0.60 77.3 0.91 EBes01_SQ002_O07_at EBes01_SQ002_O07 - - 3e+0 At4g00880 auxin-responsive family protein O.I. H.G. S.X.
0.35 45.1 0.91 Contig20148_s_at Contig20148 - - 2e-2 At2g33400 unknown protein O.I. H.G. S.X.
0.22 24.2 0.92 HVSMEm0007D17r2_at HVSMEm0007D17r2 - - 5e+0 At5g59050 unknown protein O.I. H.G. S.X.
0.11 9.4 0.91 Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.10 8.4 0.91 HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.9 99.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
20.3 99.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM398279 Moroc9-75_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1 96.2 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9 95.8 GSM398280 Moroc9-75_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the maize gene, Zm.2361.1.A1_at, orthologous to the query gene, Contig2012_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 Zm.2361.1.A1_at At3g46230 hypothetical protein LOC100191552 - 3e-17 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.51 66.4 Zm.7343.1.S1_at At3g46230 alpha globulin - 6e-1 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.45 56.4 Zm.17549.2.A1_at At3g46230 hypothetical protein LOC100272329 - 3e-1 At5g14160 F-box family protein O.I. H.G. S.X.
0.40 48.5 Zm.18669.1.A1_at At3g46230 hypothetical protein LOC100273322 - 3e-4 At5g50840 - O.I. H.G. S.X.
0.34 37.2 Zm.17765.1.S1_at At3g46230 - - 1e+0 At2g25280 - O.I. H.G. S.X.
0.34 37.2 Zm.4768.1.A1_at At3g46230 hypothetical protein LOC100192636 - 5e-30 At1g64550 ATGCN3 O.I. H.G. S.X.
0.30 29.8 Zm.9403.1.A1_at At3g46230 ras-related protein Rab11B - 3e-43 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) O.I. H.G. S.X.
0.29 28.1 Zm.10133.1.A1_at At3g46230 ruBisCO large subunit-binding protein subunit beta - 2e-60 At1g55490 CPN60B (CHAPERONIN 60 BETA) O.I. H.G. S.X.
0.28 28.1 Zm.4800.1.A1_at At3g46230 glucose-6-phosphate isomerase - 1e-40 At4g24620 PGI1 (PHOSPHOGLUCOSE ISOMERASE 1) O.I. H.G. S.X.
0.26 22.7 Zm.961.1.A1_at At3g46230 LAP4 protein - 2e+0 At2g02370 - O.I. H.G. S.X.
0.24 19.8 Zm.8827.1.A1_at At3g46230 hypothetical protein LOC100273901 - 2e+0 At4g08485 - O.I. H.G. S.X.
0.21 15.5 Zm.1417.3.A1_a_at At3g46230 - - 8e-2 At4g34960 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative O.I. H.G. S.X.
0.20 14.2 Zm.4271.5.A1_x_at At3g46230 hypothetical protein LOC100191665 - 2e+1 At3g55470 C2 domain-containing protein O.I. H.G. S.X.
0.20 14.2 Zm.17933.1.A1_at At3g46230 hypothetical protein LOC100193370 - 2e+0 At4g27670 HSP21 (HEAT SHOCK PROTEIN 21) O.I. H.G. S.X.
0.20 14.2 Zm.14536.1.A1_at At3g46230 SET domain protein SDG117 - 5e-1 At1g55260 lipid binding O.I. H.G. S.X.
0.18 11.6 Zm.3892.3.A1_at At3g46230 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.18 11.6 Zm.2134.1.A1_at At3g46230 - - 9e-2 At2g41780 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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