Co-expression analysis

Gene ID	Contig2012_s_at
Gene name
Homology with Arabidopsis	Similar to At3g46230: ATHSP17.4 (HF=2e-21)
Module size	6 genes
NF	0.24
%ile	29.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.91	Contig2012_s_at	Contig2012	-	-	2e-21	At3g46230	ATHSP17.4	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	EBes01_SQ002_O07_at	EBes01_SQ002_O07	-	-	3e+0	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.91	Contig20148_s_at	Contig20148	-	-	2e-2	At2g33400	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	HVSMEm0007D17r2_at	HVSMEm0007D17r2	-	-	5e+0	At5g59050	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	Contig7564_at	Contig7564	-	-	4e-5	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	HA05g22r_x_at	HA05g22r	-	-	4e-2	At1g47960	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.9	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
20.3	99.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.5	98.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1	96.2	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.4427.1.S1_at, orthologous to the query gene, Contig2012_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.4427.1.S1_at	At3g46230	-	-	7e-9	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.14095.1.S1_at	At3g46230	-	-	1e-8	At2g45380	-	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.108879.1.S1_s_at	At3g46230	-	-	7e+0	At1g11905	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.9424.2.S1_at	At3g46230	-	-	2e-4	At3g09350	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.12076.1.S1_at	At3g46230	-	-	6e-1	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.9254.1.S1_at	At3g46230	-	-	9e-10	At3g08910	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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