CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig2012_s_at

Gene name
Homology with Arabidopsis Similar to At3g46230: ATHSP17.4 (HF=2e-21)

Module size 6 genes

NF 0.24

%ile 29.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.91 Contig2012_s_at Contig2012 - - 2e-21 At3g46230 ATHSP17.4 O.I. H.G. S.X.
0.60 77.3 0.91 EBes01_SQ002_O07_at EBes01_SQ002_O07 - - 3e+0 At4g00880 auxin-responsive family protein O.I. H.G. S.X.
0.35 45.1 0.91 Contig20148_s_at Contig20148 - - 2e-2 At2g33400 unknown protein O.I. H.G. S.X.
0.22 24.2 0.92 HVSMEm0007D17r2_at HVSMEm0007D17r2 - - 5e+0 At5g59050 unknown protein O.I. H.G. S.X.
0.11 9.4 0.91 Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.10 8.4 0.91 HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.9 99.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
20.3 99.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM398279 Moroc9-75_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1 96.2 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9 95.8 GSM398280 Moroc9-75_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the rice gene, Os03g0267000, orthologous to the query gene, Contig2012_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os03g0267000 At3g46230 - Low molecular mass heat shock protein Oshsp18.0 6e-3 At5g59720 HSP18.2 (heat shock protein 18.2) O.I. H.G. S.X.
0.83 95.8 Os03g0277300 At3g46230 - Heat shock protein 70 7e-98 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) O.I. H.G. S.X.
0.77 93.1 Os04g0445100 At3g46230 - 22.7 kDa class IV heat shock protein precursor 2e+0 At1g54200 unknown protein O.I. H.G. S.X.
0.77 93.1 Os03g0245800 At3g46230 - - 5e-1 At5g42965 nucleic acid binding / ribonuclease H O.I. H.G. S.X.
0.73 91.1 Os01g0136200 At3g46230 - 17.7 kDa heat shock protein 1e-4 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.67 87.2 Os03g0266900 At3g46230 - Low molecular mass heat shock protein Oshsp17.3 7e-12 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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