Co-expression analysis

Gene ID Contig2008_s_at
Gene name
Homology with ArabidopsisSimilar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=2e-5)
Module size 21 genes
NF 0.41
%ile 57.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7689.80.93Contig2008_s_atContig2008--2e-5At1g5354017.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)O.I.H.G.S.X.
0.5167.50.94Contig14227_atContig14227--7e-1At2g30810gibberellin-regulated family proteinO.I.H.G.S.X.
0.5167.50.96rbaal31o11_x_atrbaal31o11--5e+0At4g31050lipoyltransferase (LIP2p)O.I.H.G.S.X.
0.5167.50.95HV14M05r_atHV14M05r--9e-2At5g38490DNA bindingO.I.H.G.S.X.
0.5066.90.96Contig26035_atContig26035--2e+0At1g10600-O.I.H.G.S.X.
0.4762.20.97HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.
0.4661.00.96HA08g16r_atHA08g16r--8e-1At2g04378beta-galactosidaseO.I.H.G.S.X.
0.4458.90.94HVSMEb0002K02r2_s_atHVSMEb0002K02r2--4e+0At5g07500PEI1O.I.H.G.S.X.
0.4458.90.95Contig23664_atContig23664--1e+0At3g51080zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.4356.40.96Contig12986_atContig12986--7e-13At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.4053.10.97HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.3950.50.94Contig446_atContig446--1e-33At1g42970GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)O.I.H.G.S.X.
0.3747.90.96EBma08_SQ003_L03_atEBma08_SQ003_L03--6e-2At2g40060protein binding / structural moleculeO.I.H.G.S.X.
0.3647.10.95U08169_atU08169--9e+0At4g30070LCR59 (Low-molecular-weight cysteine-rich 59)O.I.H.G.S.X.
0.3545.10.96EBro02_SQ008_P15_atEBro02_SQ008_P15--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.3545.10.97V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.
0.3443.60.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.
0.3342.60.95HA27P15r_atHA27P15r--2e+1At5g10990auxin-responsive family proteinO.I.H.G.S.X.
0.2935.50.96HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.2224.20.95Contig16296_atContig16296--6e+0At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.1716.90.95Contig3976_atContig3976--5e+0At5g33330RNase H domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.3GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.995.8GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.093.8GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.893.1GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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