Co-expression analysis

Gene ID	Contig2008_s_at
Gene name
Homology with Arabidopsis	Similar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=2e-5)
Module size	21 genes
NF	0.41
%ile	57.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.93	Contig2008_s_at	Contig2008	-	-	2e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.94	Contig14227_at	Contig14227	-	-	7e-1	At2g30810	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	rbaal31o11_x_at	rbaal31o11	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	HV14M05r_at	HV14M05r	-	-	9e-2	At5g38490	DNA binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.97	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	HA08g16r_at	HA08g16r	-	-	8e-1	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	HVSMEb0002K02r2_s_at	HVSMEb0002K02r2	-	-	4e+0	At5g07500	PEI1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig446_at	Contig446	-	-	1e-33	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	U08169_at	U08169	-	-	9e+0	At4g30070	LCR59 (Low-molecular-weight cysteine-rich 59)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	HA27P15r_at	HA27P15r	-	-	2e+1	At5g10990	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig16296_at	Contig16296	-	-	6e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig3976_at	Contig3976	-	-	5e+0	At5g33330	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.0	93.8	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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