Co-expression analysis

Gene ID Contig2006_s_at
Gene name
Homology with ArabidopsisSimilar to At3g46230: ATHSP17.4 (HF=4e-26)
Module size 6 genes
NF 0.48
%ile 66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.83Contig2006_s_atContig2006--4e-26At3g46230ATHSP17.4O.I.H.G.S.X.
0.7388.70.85Contig4439_atContig4439--2e-10At2g33800ribosomal protein S5 family proteinO.I.H.G.S.X.
0.6784.70.81HS09F06u_atHS09F06u--3e-4At3g50330HEC2 (HECATE 2)O.I.H.G.S.X.
0.6380.30.83Contig443_atContig443--2e-8At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.2732.10.84Contig17340_atContig17340--7e-9At3g06630protein kinase family proteinO.I.H.G.S.X.
0.2427.20.83Contig5278_atContig5278--1e+0At3g48340cysteine-type endopeptidase/ cysteine-type peptidaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.799.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
26.899.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
23.199.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
22.299.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
20.799.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
17.099.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
13.799.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.599.2GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.898.9GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
8.098.7GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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