Co-expression analysis

Gene ID Contig2004_s_at
Gene name
Homology with ArabidopsisSimilar to At2g29500: 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (HF=9e-5)
Module size 6 genes
NF 0.31
%ile 41.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.88Contig2004_s_atContig2004--9e-5At2g2950017.6 kDa class I small heat shock protein (HSP17.6B-CI)O.I.H.G.S.X.
0.6077.30.86Contig21770_atContig21770--1e+0At1g13270MAP1C (METHIONINE AMINOPEPTIDASE 1B)O.I.H.G.S.X.
0.4053.10.92Contig11904_atContig11904--2e+0At1g03620phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3545.10.90Contig19223_atContig19223--3e-1At5g66110metal ion bindingO.I.H.G.S.X.
0.1716.90.90Contig25606_atContig25606--2e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.1514.10.89Contig24536_atContig24536--1e-3At5g58010basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.799.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
20.399.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
18.799.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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