Co-expression analysis

Gene ID Contig19894_at
Gene name
Homology with ArabidopsisSimilar to At2g35640: hydroxyproline-rich glycoprotein family protein (HF=9e-1)
Module size 7 genes
NF 0.02
%ile 2.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.84Contig19894_atContig19894--9e-1At2g35640hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3849.50.87Contig3365_atContig3365--2e-85At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.
0.2732.10.84Contig4283_atContig4283--9e-1At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.075.80.88Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.054.10.87Contig6529_atContig6529--5e-8At3g12050Aha1 domain-containing proteinO.I.H.G.S.X.
0.011.10.84Contig4189_atContig4189--2e-15At4g31300PBA1O.I.H.G.S.X.
-0.20.84Contig20093_atContig20093--3e-15At3g15620UVR3 (UV REPAIR DEFECTIVE 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.7GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.698.6GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.298.0GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.497.5GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.296.3GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.995.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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