Co-expression analysis

Gene ID Contig19813_at
Gene name
Homology with ArabidopsisSimilar to At3g43083: LCR33 (Low-molecular-weight cysteine-rich 33) (HF=5e+0)
Module size 8 genes
NF 0.58
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.80Contig19813_atContig19813--5e+0At3g43083LCR33 (Low-molecular-weight cysteine-rich 33)O.I.H.G.S.X.
0.6784.70.85Contig10688_atContig10688--8e+0At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.6784.70.87Contig15475_atContig15475--4e-2At4g20860FAD-binding domain-containing proteinO.I.H.G.S.X.
0.6784.70.89Contig13383_atContig13383--1e-8At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.5674.30.85EBpi01_SQ001_A05_s_atEBpi01_SQ001_A05--3e+0At2g31005-O.I.H.G.S.X.
0.4661.00.82Contig14553_atContig14553--2e+0At2g27790nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3849.50.88Contig10689_atContig10689--3e-10At2g40360transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3342.60.89Contig18135_atContig18135--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.00.88Contig26243_s_atContig26243--4e-6At3g17300-O.I.H.G.S.X.
0.5066.90.81HV_CEb0012I09r2_x_atHV_CEb0012I09r2--5e-1At1g72890disease resistance protein (TIR-NBS class), putativeO.I.H.G.S.X.
0.4661.00.70Contig15754_atContig15754--3e-3At1g77390CYCA1O.I.H.G.S.X.
0.4255.20.78Contig5659_atContig5659--1e+0At1g34290AtRLP5 (Receptor Like Protein 5)O.I.H.G.S.X.
0.3240.30.78Contig1198_x_atContig1198--2e-54At4g38970fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.3240.30.81Contig1203_atContig1203--9e-33At5g56010HSP81-3O.I.H.G.S.X.
0.3138.60.82Contig3881_atContig3881--2e-21At3g16100ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)O.I.H.G.S.X.
0.3138.60.81Contig10780_atContig10780--2e-1At4g22370unknown proteinO.I.H.G.S.X.
0.2935.50.84HZ65M04r_atHZ65M04r--4e+0At3g06110MKP2 (MAPK PHOSPHATASE 2)O.I.H.G.S.X.
0.2935.50.86Contig9421_atContig9421--3e-7At5g19690STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)O.I.H.G.S.X.
0.2732.10.76Contig10344_atContig10344--2e-1At5g51610ribosomal protein L11 family proteinO.I.H.G.S.X.
0.2528.90.81Contig6007_atContig6007--2e+1At5g61412unknown proteinO.I.H.G.S.X.
0.2528.90.85Contig11424_atContig11424--2e+0At1g21770-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
9.499.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.598.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.598.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.198.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.497.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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