Co-expression analysis

Gene ID Contig19813_at
Gene name
Homology with ArabidopsisSimilar to At3g43083: LCR33 (Low-molecular-weight cysteine-rich 33) (HF=5e+0)
Module size 8 genes
NF 0.58
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.80Contig19813_atContig19813--5e+0At3g43083LCR33 (Low-molecular-weight cysteine-rich 33)O.I.H.G.S.X.
0.6784.70.85Contig10688_atContig10688--8e+0At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.6784.70.87Contig15475_atContig15475--4e-2At4g20860FAD-binding domain-containing proteinO.I.H.G.S.X.
0.6784.70.89Contig13383_atContig13383--1e-8At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.5674.30.85EBpi01_SQ001_A05_s_atEBpi01_SQ001_A05--3e+0At2g31005-O.I.H.G.S.X.
0.4661.00.82Contig14553_atContig14553--2e+0At2g27790nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3849.50.88Contig10689_atContig10689--3e-10At2g40360transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3342.60.89Contig18135_atContig18135--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
9.499.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.598.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.598.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.198.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.497.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1162.1.S1_at, orthologous to the query gene, Contig19813_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.5Zm.1162.1.S1_atAt3g43083--9e-17At5g04170calcium-binding EF hand family proteinO.I.H.G.S.X.
0.5976.1Zm.4164.2.A1_atAt3g43083--6e+0At4g19640ARA7O.I.H.G.S.X.
0.5369.1Zm.6996.1.A1_atAt3g43083--8e-1At2g28671unknown proteinO.I.H.G.S.X.
0.5369.1Zm.13759.1.S1_atAt3g43083--6e-15At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.
0.5065.7Zm.9135.2.A1_atAt3g43083versicolorin reductase-4e-1At5g59990-O.I.H.G.S.X.
0.4251.3Zm.6946.2.A1_atAt3g43083Hypothetical protein LOC100191975-3e-6At1g11680CYP51G1 (CYTOCHROME P450 51G1)O.I.H.G.S.X.
0.4048.5Zm.5712.1.A1_atAt3g43083--1e+1At5g19875unknown proteinO.I.H.G.S.X.
0.2419.8Zm.384.1.A1_atAt3g43083physical impedance induced protein2-6e+0At5g03100F-box family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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