Co-expression analysis

Gene ID Contig19813_at
Gene name
Homology with ArabidopsisSimilar to At3g43083: LCR33 (Low-molecular-weight cysteine-rich 33) (HF=5e+0)
Module size 8 genes
NF 0.58
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.80Contig19813_atContig19813--5e+0At3g43083LCR33 (Low-molecular-weight cysteine-rich 33)O.I.H.G.S.X.
0.6784.70.85Contig10688_atContig10688--8e+0At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.6784.70.87Contig15475_atContig15475--4e-2At4g20860FAD-binding domain-containing proteinO.I.H.G.S.X.
0.6784.70.89Contig13383_atContig13383--1e-8At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.5674.30.85EBpi01_SQ001_A05_s_atEBpi01_SQ001_A05--3e+0At2g31005-O.I.H.G.S.X.
0.4661.00.82Contig14553_atContig14553--2e+0At2g27790nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3849.50.88Contig10689_atContig10689--3e-10At2g40360transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3342.60.89Contig18135_atContig18135--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
9.499.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.598.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.598.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.198.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.497.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.36690.1.A1_at, orthologous to the query gene, Contig19813_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.8TaAffx.36690.1.A1_atAt3g43083--5e+0At3g12650unknown proteinO.I.H.G.S.X.
0.5072.4Ta.10460.1.S1_atAt3g43083--3e+0At3g54840ARA6O.I.H.G.S.X.
0.4058.4TaAffx.38113.1.A1_atAt3g43083--1e+0At1g54230DNA bindingO.I.H.G.S.X.
0.3549.8Ta.11787.1.A1_atAt3g43083--4e+0At4g35980unknown proteinO.I.H.G.S.X.
0.3549.8TaAffx.118799.1.A1_atAt3g43083--2e-5At1g48420D-CDES (D-CYSTEINE DESULFHYDRASE)O.I.H.G.S.X.
0.2939.2TaAffx.85651.1.S1_atAt3g43083--1e+1At5g61430ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)O.I.H.G.S.X.
0.2839.2Ta.15158.1.A1_atAt3g43083--2e-2At4g18330eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putativeO.I.H.G.S.X.
0.2430.3Ta.8681.1.A1_atAt3g43083--3e+0At5g20900JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)O.I.H.G.S.X.
0.2430.3Ta.25400.1.A1_atAt3g43083--1e-1At1g62060unknown proteinO.I.H.G.S.X.
0.2125.5Ta.10598.1.A1_atAt3g43083--7e+0At5g24310ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)O.I.H.G.S.X.
0.2125.5Ta.17601.1.S1_atAt3g43083--4e+0At5g58530glutaredoxin family proteinO.I.H.G.S.X.
0.1618.2Ta.17267.1.S1_atAt3g43083--3e-10At5g17920ATMS1O.I.H.G.S.X.
0.1415.8Ta.24041.1.A1_x_atAt3g43083--1e+0At4g36240zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.0910.4Ta.18474.1.S1_atAt3g43083--3e+0At4g02860catalyticO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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