Co-expression analysis

Gene ID Contig19806_at
Gene name
Homology with ArabidopsisSimilar to At1g67080: ABA4 (abscisic acid (ABA)-deficient 4) (HF=1e+0)
Module size 7 genes
NF 0.86
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig19806_atContig19806--1e+0At1g67080ABA4 (abscisic acid (ABA)-deficient 4)O.I.H.G.S.X.
0.9298.40.93Contig15119_atContig15119--9e-5At5g20960AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)O.I.H.G.S.X.
0.9298.40.94Contig8761_atContig8761--3e-1At5g58010basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.8694.80.92Contig23175_atContig23175--3e+0At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)O.I.H.G.S.X.
0.8694.80.93Contig20176_atContig20176--4e-1At4g26580protein binding / zinc ion bindingO.I.H.G.S.X.
0.7790.80.94Contig9661_atContig9661--1e-1At1g79975-O.I.H.G.S.X.
0.6784.70.94Contig7156_atContig7156--3e+0At1g11470-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.993.4GSM282024Malting_day4_Merit_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage