Co-expression analysis

Gene ID	Contig197_at
Gene name
Homology with Arabidopsis	Similar to At5g59690: histone H4 (HF=1e-24)
Module size	24 genes
NF	0.25
%ile	31.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	0.91	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	EBem04_SQ004_M07_s_at	EBem04_SQ004_M07	-	-	8e-2	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig5553_at	Contig5553	-	-	2e+0	At4g15955	epoxide hydrolase-related	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.94	Contig16766_at	Contig16766	-	-	1e+0	At1g73530	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.94	Contig8884_at	Contig8884	-	-	3e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig7318_at	Contig7318	-	-	9e-32	At4g34900	XDH2 (XXANTHINE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig5191_at	Contig5191	-	-	1e-11	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	Contig9681_at	Contig9681	-	-	3e-1	At1g62200	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig14639_at	Contig14639	-	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig12039_at	Contig12039	beclin 1 protein	-	5e-1	At3g06820	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig9791_at	Contig9791	-	-	2e-3	At3g02570	MEE31 (MATERNAL EFFECT EMBRYO ARREST 31)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.92	Contig8671_at	Contig8671	-	-	3e-6	At3g05600	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig6816_at	Contig6816	-	-	2e+0	At4g13640	UNE16 (unfertilized embryo sac 16)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.93	Contig8655_at	Contig8655	-	-	5e-6	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig4782_at	Contig4782	-	-	4e-1	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.92	Contig6738_at	Contig6738	-	-	9e-2	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig9862_at	Contig9862	-	-	1e+0	At1g38630	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig13507_at	Contig13507	-	-	2e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig9988_at	Contig9988	-	-	2e-13	At4g05160	4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig5114_at	Contig5114	-	-	1e-2	At5g19960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig3497_s_at	Contig3497	-	-	4e+0	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig9065_at	Contig9065	-	-	4e-77	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.93	HVSMEa0001A19r2_at	HVSMEa0001A19r2	-	-	1e+1	At4g24340	phosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig13724_at	Contig13724	-	-	1e-7	At5g09770	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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