Co-expression analysis

Gene ID	Contig19685_at
Gene name
Homology with Arabidopsis	Similar to At1g64010: serpin, putative / serine protease inhibitor, putative (HF=2e+0)
Module size	13 genes
NF	0.47
%ile	66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.95	Contig19685_at	Contig19685	-	-	2e+0	At1g64010	serpin, putative / serine protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig14607_at	Contig14607	-	-	2e+0	At4g37440	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig7815_s_at	Contig7815	-	-	2e-5	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig7044_at	Contig7044	-	-	4e-3	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig11010_at	Contig11010	-	-	4e-6	At3g11960	cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig24881_s_at	Contig24881	-	-	5e-2	At1g75340	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig5311_at	Contig5311	O-methyltransferase	-	7e-1	At1g62900	O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig20475_at	Contig20475	-	-	2e+0	At2g23067	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.96	Contig12827_at	Contig12827	-	-	8e-1	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig9932_at	Contig9932	-	-	6e-7	At5g03530	RABC2A (RAB GTPASE HOMOLOG C2A)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig16812_at	Contig16812	-	-	3e+0	At4g23770	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	Contig5857_s_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	99.1	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.9	98.3	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
5.3	97.4	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.2	96.3	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.2	96.3	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.2	96.3	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.9	95.8	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.7	95.5	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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