Co-expression analysis

Gene ID	Contig19683_at
Gene name
Homology with Arabidopsis	Similar to At3g24820: BSD domain-containing protein (HF=1e+0)
Module size	6 genes
NF	0.64
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.93	Contig19665_at	Contig19665	-	-	3e-1	At3g16820	F-box family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	HU09E15u_at	HU09E15u	-	-	1e+1	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	HU09E15u_x_at	HU09E15u	-	-	1e+1	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig20962_at	Contig20962	-	-	9e-9	At2g33820	MBAC1	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.3	99.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.50116.1.A1_at, orthologous to the query gene, Contig19683_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	PtpAffx.50116.1.A1_at	At3g24820	-	-	4e+0	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.203127.1.S1_at	At3g24820	hypothetical protein	-	1e-44	At1g31810	actin binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.153670.1.A1_at	At3g24820	hypothetical protein	-	1e-3	At1g19600	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.86489.1.S1_at	At3g24820	hypothetical protein	-	1e-1	At1g10830	sodium symporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.4081.1.S1_at	At3g24820	-	-	2e+0	At5g16130	40S ribosomal protein S7 (RPS7C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.214178.1.S1_at	At3g24820	gibberellin 3-oxidase	-	5e-1	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.2026.1.S1_at	At3g24820	-	-	4e+0	At5g62060	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.249.599.A1_s_at	At3g24820	hypothetical protein	-	1e+0	At5g59613	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.208994.1.S1_at	At3g24820	hypothetical protein	-	5e+0	At3g50460	HR2 (HOMOLOG OF RPW8 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.31077.1.A1_at	At3g24820	-	-	5e-1	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.224238.1.S1_at	At3g24820	hypothetical protein	-	5e-3	At1g35140	PHI-1 (PHOSPHATE-INDUCED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.120374.1.A1_at	At3g24820	-	-	1e-1	At1g64000	WRKY56	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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