CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig19683_at

Gene name
Homology with Arabidopsis Similar to At3g24820: BSD domain-containing protein (HF=1e+0)

Module size 6 genes

NF 0.64

%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.94 Contig19683_at Contig19683 - - 1e+0 At3g24820 BSD domain-containing protein O.I. H.G. S.X.
0.73 88.7 0.93 Contig19665_at Contig19665 - - 3e-1 At3g16820 F-box family protein O.I. H.G. S.X.
0.67 84.7 0.94 HU09E15u_at HU09E15u - - 1e+1 At4g37090 unknown protein O.I. H.G. S.X.
0.67 84.7 0.96 HU09E15u_x_at HU09E15u - - 1e+1 At4g37090 unknown protein O.I. H.G. S.X.
0.40 53.1 0.94 Contig20962_at Contig20962 - - 9e-9 At2g33820 MBAC1 O.I. H.G. S.X.
0.36 47.1 0.94 Contig26498_at Contig26498 - - 2e-2 At4g00960 protein kinase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
9.3 99.0 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.5 98.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4 97.5 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6 96.8 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3 96.4 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.2 96.3 GSM261064 Xantha s-46 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7 95.5 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.3 94.6 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os04g0619400, orthologous to the query gene, Contig19683_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 Os04g0619400 At3g24820 - Protein kinase domain containing protein 9e-7 At1g16670 protein kinase family protein O.I. H.G. S.X.
0.73 91.1 Os07g0545800 At3g24820 - Chitin-inducible gibberellin-responsive protein 7e-2 At5g48150 PAT1 (phytochrome a signal transduction 1) O.I. H.G. S.X.
0.67 87.2 Os10g0555100 At3g24820 - DNA chromosome 4, ESSA I CONTIG fragment NO. 6(Glucosyltransferase like protein) 7e-11 At2g35710 glycogenin glucosyltransferase (glycogenin)-related O.I. H.G. S.X.
0.67 87.2 Os02g0165100 At3g24820 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) O.I. H.G. S.X.
0.67 87.2 Os03g0302200 At3g24820 - Zn-finger-like, PHD finger domain containingprotein 3e-14 At3g05670 PHD finger family protein O.I. H.G. S.X.
0.50 68.0 Os03g0285800 At3g24820 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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