Co-expression analysis

Gene ID Contig19683_at
Gene name
Homology with ArabidopsisSimilar to At3g24820: BSD domain-containing protein (HF=1e+0)
Module size 6 genes
NF 0.64
%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.94Contig19683_atContig19683--1e+0At3g24820BSD domain-containing proteinO.I.H.G.S.X.
0.7388.70.93Contig19665_atContig19665--3e-1At3g16820F-box family proteinO.I.H.G.S.X.
0.6784.70.94HU09E15u_atHU09E15u--1e+1At4g37090unknown proteinO.I.H.G.S.X.
0.6784.70.96HU09E15u_x_atHU09E15u--1e+1At4g37090unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig20962_atContig20962--9e-9At2g33820MBAC1O.I.H.G.S.X.
0.3647.10.94Contig26498_atContig26498--2e-2At4g00960protein kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.5GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
9.399.0GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.598.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.497.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.296.3GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.394.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g24820, orthologous to the query gene, Contig19683_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.4050.8At3g24820822080BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.2930.3At2g43280818930far-red impaired responsive family protein / FAR1 family proteinF:unknown;P:response to red or far red light;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.2At2g10950815559BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.H.G.S.X.
0.2014.4At3g50360824198ATCEN2 (CENTRIN2)F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MFPOBVO.I.H.G.S.X.
0.1811.4At5g22950832359VPS24.1F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBAO.I.H.G.S.X.
0.1710.2At4g18593827592dual specificity protein phosphatase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.168.8At2g35635818132UBQ7encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.O.I.H.G.S.X.
0.157.8At4g12340826843-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.103.4At5g51700835244PBS2 (PPHB SUSCEPTIBLE 2)Encodes a resistance signalling protein with two zinc binding (CHORD) domains that are highly conserved across eukaryotic phyla. Mutant has reduced RPS5 and RPM1 mediated resistance. Potentially involved in transduction of R gene mediated disease resistance. Required for R protein accumulation.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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