Co-expression analysis

Gene ID	Contig19672_at
Gene name
Homology with Arabidopsis	Similar to At3g09980: unknown protein (HF=5e-7)
Module size	6 genes
NF	0.10
%ile	12.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.91	Contig19672_at	Contig19672	-	-	5e-7	At3g09980	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	HS09L05u_at	HS09L05u	-	-	4e+0	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig2433_s_at	Contig2433	-	-	9e-9	At4g29260	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	HS05E20u_x_at	HS05E20u	-	-	6e+0	At5g48700	ubiquitin-related	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	HVSMEb0001J09r2_x_at	HVSMEb0001J09r2	-	-	7e+0	At5g45710	RHA1 (ROOT HANDEDNESS 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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